⚡ Metabolism
Synthesis: cytoplasm, NADPH, malonyl-CoA, adds 2C per cycle. Oxidation: mitochondria, NAD⁺/FAD, removes 2C per cycle. Opposites.
Two mirror-image pathways — and why the cell never runs both at the same time
Opp
They are biochemical opposites
Fatty acid synthesis and beta-oxidation are reciprocal pathways: opposite locations, opposite cofactors, opposite direction, and reciprocally regulated. The cell never runs both simultaneously — it would be a futile cycle wasting ATP.
Memory trick: Synthesis and oxidation are like two escalators going opposite directions. You ride only one at a time.
Syn
Fatty acid synthesis — key features
Location: cytoplasm. Enzyme: fatty acid synthase (FAS) — one multifunctional enzyme. Building block: malonyl-CoA (3C) adds 2 carbons per cycle. Electron donor: NADPH (from pentose phosphate pathway). Product: palmitoyl-CoA (16C) after 7 cycles. Regulation: activated by insulin/citrate; inhibited by malonyl-CoA (which also blocks beta-oxidation).
Ox
Beta-oxidation — key features
Location: mitochondrial matrix. Enzymes: multiple separate enzymes. Removes 2 carbons per cycle as acetyl-CoA. Electron acceptors: FAD and NAD⁺ → FADH₂ and NADH → ETC. Transport: requires carnitine shuttle to enter mitochondria. Regulation: inhibited by malonyl-CoA (blocks CPT-I); activated by glucagon/low insulin.
Mal
Malonyl-CoA — the master switch
Malonyl-CoA is the key reciprocal regulator: when fatty acid synthesis is ON (fed state), malonyl-CoA rises → inhibits CPT-I → blocks entry of fatty acids into mitochondria → beta-oxidation is OFF. When fatty acid synthesis is OFF (fasting), malonyl-CoA falls → CPT-I is active → fatty acids enter mitochondria → beta-oxidation is ON.
1
After a meal: insulin rises → activates ACC (acetyl-CoA carboxylase) → malonyl-CoA rises → fatty acid synthesis begins in cytoplasm (NADPH from PPP). CPT-I is inhibited → no beta-oxidation.
2
During fasting: glucagon → inhibits ACC → malonyl-CoA falls → CPT-I is active → fatty acids enter mitochondria via carnitine shuttle → beta-oxidation produces acetyl-CoA + NADH + FADH₂ → ETC → ATP.
3
The two pathways use different cofactors (NADPH for synthesis, NAD⁺/FAD for oxidation) and occur in different compartments — ensuring they can't directly compete.
4
Malonyl-CoA is the elegantly simple switch: it's the first committed product of fatty acid synthesis AND the inhibitor of beta-oxidation. One molecule, two jobs.

Exams test the compartment difference (synthesis = cytoplasm, oxidation = mitochondria), cofactor difference (NADPH vs NADH/FADH₂), the role of malonyl-CoA as the master switch, and carnitine's role in transporting activated fatty acids into the mitochondria. The reciprocal regulation by insulin vs glucagon is essential.

Students mix up NADPH and NADH — synthesis uses NADPH (not NADH). Oxidation produces NADH and FADH₂ (not NADPH). Also: fatty acid synthesis uses malonyl-CoA (3C) as the building block, NOT acetyl-CoA directly. Acetyl-CoA → malonyl-CoA (by ACC) first, then malonyl-CoA adds 2C per cycle.

1. Where does fatty acid synthesis occur vs beta-oxidation?
Synthesis: cytoplasm. Beta-oxidation: mitochondrial matrix.
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2. What is the electron donor for fatty acid synthesis?
NADPH — produced mainly by the pentose phosphate pathway.
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3. What is the role of malonyl-CoA in metabolic regulation?
Malonyl-CoA is the first committed product of fatty acid synthesis AND inhibits CPT-I (blocking entry of fatty acids into mitochondria for beta-oxidation) — ensuring the two pathways don't run simultaneously.
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4. What transports fatty acids into the mitochondria for beta-oxidation?
The carnitine shuttle (carnitine palmitoyl transferase I — CPT-I on the outer membrane, CPT-II on the inner membrane).
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5. What enzyme commits acetyl-CoA to fatty acid synthesis?
Acetyl-CoA carboxylase (ACC) — converts acetyl-CoA → malonyl-CoA. This is the rate-limiting step of fatty acid synthesis.
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