โš•๏ธ Microbiology · Fungi & Parasites

Microbiology tricks that make fungi & parasites stick

Fungal infections, parasitology, and life cycles โ€” memorized.

๐Ÿ„ Fungi & Parasites

Memory tricks

Proven mnemonics — fast to learn, hard to forget.

Candida
Candida: normal flora that overgrows when defenses drop. "Thrush, diaper rash, or systemic if immunocompromised."
Candida albicans
The most common opportunistic fungal pathogen โ€” already living in you
C. albicans: normal oral, GI, vaginal flora. Overgrows when: antibiotics kill bacteria, immunosuppression (HIV, transplant), diabetes, prolonged steroids. Pseudohyphae on microscopy. Oral thrush: white plaques. Vulvovaginal candidiasis: cottage cheese discharge, pruritus. Invasive candidiasis (candidemia): ICU patients with central lines. Treat: fluconazole (mild-moderate), echinocandin (invasive).
Aspergillus
Aspergillus: "Septate hyphae at 45ยฐ angle." Invasive in neutropenic patients. Aspergilloma = fungus ball in cavities.
Aspergillus fumigatus
The mold that kills immunocompromised patients โ€” and lives in everyone's lungs
Aspergillus fumigatus: ubiquitous in soil/air, inhaled spores. Allergic bronchopulmonary aspergillosis (ABPA): in asthma/CF patients โ€” immune reaction. Aspergilloma: fungus ball colonizes pre-existing cavity (TB cavities). Invasive aspergillosis: in neutropenic patients (AML, transplant) โ†’ angioinvasion โ†’ hemorrhagic infarcts. Halo sign on CT. Treat: voriconazole.
Cryptococcus
Cryptococcus: "Soap bubbles in brain." India ink stain shows capsule. Meningitis in AIDS patients (CD4 <100).
Cryptococcus neoformans
The encapsulated yeast that causes the most common AIDS-related meningitis
Cryptococcus neoformans: found in pigeon droppings and soil. Large polysaccharide capsule โ€” antiphagocytic virulence factor. India ink stain: clear halo around yeast. Latex agglutination test: detects capsular antigen in CSF. Presentation: subacute meningitis (headache, fever) in HIV+ (CD4 <100). CSF: India ink +, very high opening pressure. Treat: amphotericin B + flucytosine induction, then fluconazole maintenance.
Pneumocystis
PCP (Pneumocystis jirovecii pneumonia): AIDS-defining illness. CD4 <200. "Bat-wing infiltrates." Treat: TMP-SMX.
Pneumocystis jirovecii
The AIDS-defining opportunistic lung infection formerly thought to be a protozoan
P. jirovecii: now classified as fungus (not protozoan). Cannot culture โ€” diagnose by BAL + GMS stain (cysts). Presentation: progressive dyspnea, dry cough, fever, hypoxia. CXR: bilateral interstitial infiltrates (bat wings). High LDH. CD4 <200 triggers prophylaxis with TMP-SMX. Treatment: TMP-SMX high dose 21 days. Add steroids if PaOโ‚‚ <70 mmHg. Second-line: pentamidine, atovaquone.
Malaria Life Cycle
Malaria: mosquito injects sporozoites โ†’ liver (exoerythrocytic) โ†’ RBCs (erythrocytic) โ†’ symptoms = RBC rupture.
Plasmodium Life Cycle
The two-host life cycle that explains malaria symptoms and treatment targets
Anopheles mosquito: injects sporozoites โ†’ liver (silent phase, 1โ€“2 weeks). Merozoites released โ†’ infect RBCs โ†’ trophozoites โ†’ schizonts โ†’ rupture. Fever pattern: P. vivax/ovale (48 hr, tertian), P. malariae (72 hr, quartan). P. falciparum: most severe โ€” cytoadherence, rosetting โ†’ cerebral malaria. P. vivax/ovale: hypnozoites persist in liver โ†’ relapse. Primaquine kills liver stage. Chloroquine/artemisinin kills blood stage.
Helminth Categories
Helminths: NTC โ€” Nematodes (roundworms), Trematodes (flukes), Cestodes (tapeworms)
Nematodes ยท Trematodes ยท Cestodes
Three major worm categories โ€” each with distinctive biology and treatment
Nematodes (roundworms): Ascaris (fecal-oral, Loeffler syndrome), hookworm (anemia), Strongyloides (autoinfection), pinworm (Enterobius โ€” scotch tape test), Trichinella (undercooked pork โ€” muscle cysts). Trematodes (flukes): Schistosoma (freshwater snail), liver flukes. Cestodes (tapeworms): Taenia solium (neurocysticercosis), Echinococcus (hydatid cysts). Treat all with albendazole/mebendazole except schistosomiasis (praziquantel).
Nematodes
Roundworms โ€” Ascaris, hookworm, pinworm
Trematodes
Flukes โ€” Schistosoma, liver flukes
Cestodes
Tapeworms โ€” Taenia, Echinococcus
Tinea (Dermatophytes)
Tinea = dermatophyte (ringworm). Named by body location: capitis (scalp), corporis (body), pedis (athlete's foot), cruris (jock itch), unguium (nails).
Dermatophyte Infections
Superficial fungal infections โ€” same organisms, different location names
Three genera: Trichophyton, Microsporum, Epidermophyton. Infect keratinized tissue only (skin, hair, nails). KOH prep: hyphae visible. Tinea pedis (athlete's foot): most common โ€” interdigital. Tinea unguium (onychomycosis): yellow, thickened nails. Tinea capitis in children: treat systemically (griseofulvin or terbinafine). Topical clotrimazole/miconazole for skin. Nail: oral terbinafine.
Toxoplasma
Toxoplasma: "cats + pregnant women + AIDS." Brain ring-enhancing lesions. Reactivation when CD4 <100.
Toxoplasma gondii
The parasite that lives harmlessly in healthy adults but devastates the immunocompromised
Definitive host: cats (oocysts in feces). Humans: ingestion of oocysts or tissue cysts (undercooked meat). Healthy adults: asymptomatic or mono-like illness. Danger zones: (1) Primary infection in pregnancy โ†’ congenital toxoplasmosis (chorioretinitis, hydrocephalus, intracranial calcifications). (2) Reactivation in AIDS (CD4 <100) โ†’ encephalitis, ring-enhancing lesions. Treat: pyrimethamine + sulfadiazine. TMP-SMX prevents reactivation.
Giardia
Giardia: "backpacker's diarrhea" โ€” contaminated water. Trophozoite has two nuclei = "owl eyes." Flagella-propelled.
Giardia lamblia
The most common intestinal parasitic infection in the US
Fecal-oral transmission via cysts in contaminated water (streams, lakes โ€” resistant to chlorine). Cysts โ†’ small intestine โ†’ trophozoites attach to mucosa (ventral disc) โ†’ malabsorption. Symptoms: foul-smelling fatty diarrhea (steatorrhea), bloating, no blood/mucus. Diagnosis: stool O&P exam (teardrop trophozoites with 2 nuclei), antigen test. Treatment: metronidazole or tinidazole. Prevention: filter/boil backcountry water.
Schistosomiasis
Schistosoma: only trematode with separate sexes. Penetrates skin in freshwater. Eggs cause granulomas.
Schistosoma species
The blood fluke that causes chronic liver and bladder disease in the tropics
Cercariae released from snails โ†’ penetrate human skin in freshwater. Adult worms live in blood vessels (not gut). Eggs deposited โ†’ granuloma formation โ†’ pathology. S. mansoni/japonicum: portal hypertension, hepatosplenomegaly, esophageal varices. S. haematobium: bladder (hematuria, squamous cell carcinoma risk). Acute: Katayama fever (immune complex). Treatment: praziquantel (all species). No snails in US โ€” travel history key.
Entamoeba histolytica
Entamoeba: "RBC in cytoplasm = pathogenic." Flask-shaped colonic ulcers. Liver abscess "anchovy paste" aspirate.
Entamoeba histolytica
The amoeba that causes bloody diarrhea and can spread to the liver
Fecal-oral via cysts. Travel to tropical/developing countries. Trophozoites invade colon โ†’ flask-shaped ulcers โ†’ bloody dysentery (blood + mucus, unlike Giardia). Amoebic liver abscess: portal spread โ†’ single right lobe abscess โ†’ "anchovy paste" pus (no bacteria). Diagnosis: stool O&P (RBCs in trophozoite cytoplasm = hallmark), serology for liver abscess. Treat: metronidazole + paromomycin (luminal cysts).